STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_0483PFAM: peptidase U6 penicillin-insensitive murein endopeptidase; KEGG: rle:RL0184 penicillin-insensitive murein endopeptidase. (317 aa)    
Predicted Functional Partners:
Rvan_0484
KEGG: hypothetical protein.
       0.773
Rvan_0064
PFAM: protein of unknown function DUF882; KEGG: protein of unknown function DUF882.
  
     0.729
Rvan_2190
PFAM: protein of unknown function DUF463 YcjX family protein; KEGG: rpb:RPB_3941 hypothetical protein.
  
     0.639
Rvan_2191
PFAM: Uncharacterised protein family UPF0283; KEGG: atc:AGR_C_2505 hypothetical protein.
  
     0.623
Rvan_3366
PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: azc:AZC_0957 ErfK/YbiS/YcfS/YnhG precursor.
  
     0.592
Rvan_0663
PFAM: ribonuclease T2; KEGG: rpc:RPC_1400 ribonuclease T2; Belongs to the RNase T2 family.
  
     0.576
Rvan_0909
KEGG: met:M446_2502 hypothetical protein.
  
     0.472
Rvan_1206
KEGG: bra:BRADO6669 putative outer-membrane immunogenic protein precursor; putative secreted protein.
  
     0.464
aroC
Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.
 
  
 0.457
Rvan_3013
PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: xau:Xaut_3215 ErfK/YbiS/YcfS/YnhG family protein.
  
     0.438
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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