STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_0486KEGG: app:CAP2UW1_2233 hypothetical protein. (236 aa)    
Predicted Functional Partners:
Rvan_0485
Acyltransferase, WS/DGAT/MGAT; KEGG: asa:ASA_2036 hypothetical protein; TIGRFAM: acyltransferase, WS/DGAT/MGAT; PFAM: protein of unknown function UPF0089.
 
     0.879
Rvan_0462
PFAM: Patatin; KEGG: aha:AHA_2273 patatin family phospholipase.
 
     0.776
Rvan_0461
KEGG: app:CAP2UW1_3347 poly(hydroxyalkanoate) granule-associated protein; TIGRFAM: poly(hydroxyalkanoate) granule-associated protein; PFAM: poly granule associated family protein.
  
     0.771
Rvan_0460
PFAM: Male sterility domain; short-chain dehydrogenase/reductase SDR; KEGG: app:CAP2UW1_3348 male sterility domain protein.
  
     0.717
Rvan_0463
PFAM: regulatory protein TetR; KEGG: app:CAP2UW1_3345 transcriptional regulator, TetR family.
  
     0.673
Rvan_0487
Hypothetical protein; KEGG: mcc:717305 similar to paraneoplastic antigen MA2.
       0.487
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.