Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rvan_0498KEGG: oca:OCAR_4561 putative iron compound ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase. (262 aa)    
Predicted Functional Partners:
Rvan_0497
PFAM: transport system permease protein; KEGG: nwi:Nwi_2075 ABC-type Fe3+-siderophore transport system permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.990
Rvan_0496
PFAM: periplasmic binding protein; KEGG: avn:Avin_00450 ABC transporter, periplasmic binding protein.
 
 
 0.979
Rvan_0492
PFAM: periplasmic binding protein; KEGG: avn:Avin_00450 ABC transporter, periplasmic binding protein.
 
 
 0.943
Rvan_1027
PFAM: transport system permease protein; KEGG: pla:Plav_0181 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.942
Rvan_2501
KEGG: nha:Nham_3730 transport system permease protein; manually curated; PFAM: transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.930
Rvan_1223
PFAM: transport system permease protein; KEGG: pde:Pden_3012 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.916
Rvan_1224
PFAM: transport system permease protein; KEGG: pde:Pden_3011 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.911
Rvan_0046
ABC transporter related protein; KEGG: mag:amb4338 ABC-type cobalt transport system, ATPase component; PFAM: ABC transporter related; SMART: AAA ATPase.
    
0.788
Rvan_2499
PFAM: periplasmic binding protein; KEGG: rpc:RPC_4256 periplasmic binding protein.
 
 
 0.743
Rvan_0499
KEGG: oca:OCAR_4562 TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor.
 
  
 0.702
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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