STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_0501PFAM: nitroreductase; KEGG: rpa:RPA1392 nitroreductase family proteins. (182 aa)    
Predicted Functional Partners:
Rvan_0504
KEGG: rpa:RPA1389 hypothetical protein.
 
    0.788
Rvan_0502
KEGG: rpa:RPA1391 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.745
Rvan_0503
PFAM: cobalamin synthesis protein P47K; KEGG: rpa:RPA1390 hypothetical protein.
       0.741
Rvan_1377
PFAM: ABC-2 type transporter; KEGG: nha:Nham_2741 hypothetical protein.
  
  
 0.518
Rvan_1183
PFAM: ABC-2 type transporter; KEGG: rpc:RPC_2367 hypothetical protein.
  
  
 0.506
Rvan_1184
PFAM: ABC-2 type transporter; KEGG: rpc:RPC_2368 hypothetical protein.
  
  
 0.506
Rvan_0500
KEGG: mno:Mnod_3106 hypothetical protein.
       0.481
Rvan_0512
Lactoylglutathione lyase; KEGG: rpa:RPA1377 glyoxalase; TIGRFAM: lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
  
    0.468
Rvan_0513
PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: rpa:RPA1377 glyoxalase.
  
    0.468
Rvan_0772
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: xau:Xaut_4172 glyoxalase/bleomycin resistance protein/dioxygenase.
  
    0.468
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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