STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_0502KEGG: rpa:RPA1391 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase. (342 aa)    
Predicted Functional Partners:
Rvan_0503
PFAM: cobalamin synthesis protein P47K; KEGG: rpa:RPA1390 hypothetical protein.
    0.985
Rvan_0504
KEGG: rpa:RPA1389 hypothetical protein.
 
    0.950
Rvan_0494
PFAM: cobalamin synthesis protein P47K; KEGG: avn:Avin_00470 nickel incorporation protein.
    0.927
Rvan_2885
PFAM: protein of unknown function DUF214; KEGG: hna:Hneap_0780 protein of unknown function DUF214.
  
 
 0.799
Rvan_0493
KEGG: avn:Avin_00460 hypothetical protein.
 
    0.791
Rvan_0501
PFAM: nitroreductase; KEGG: rpa:RPA1392 nitroreductase family proteins.
       0.745
Rvan_0256
PFAM: protein of unknown function DUF214; KEGG: bbt:BBta_7062 putative ABC transporter, permease protein.
  
 
 0.630
Rvan_0578
PFAM: protein of unknown function DUF214; KEGG: rde:RD1_1737 peptide ABC transporter, permease component, putative.
  
 
 0.630
Rvan_3537
KEGG: bbt:BBta_4530 LolC/E family lipoprotein releasing system, transmembrane protein; TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214.
  
 
 0.630
Rvan_2226
Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
   
 
 0.573
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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