STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_0504KEGG: rpa:RPA1389 hypothetical protein. (367 aa)    
Predicted Functional Partners:
Rvan_0502
KEGG: rpa:RPA1391 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 
    0.950
Rvan_0503
PFAM: cobalamin synthesis protein P47K; KEGG: rpa:RPA1390 hypothetical protein.
 
     0.948
Rvan_0495
KEGG: avn:Avin_00480 ABC transporter, ATP binding component; PFAM: ABC transporter related; SMART: AAA ATPase.
 
    0.791
Rvan_0501
PFAM: nitroreductase; KEGG: rpa:RPA1392 nitroreductase family proteins.
 
    0.788
Rvan_0494
PFAM: cobalamin synthesis protein P47K; KEGG: avn:Avin_00470 nickel incorporation protein.
 
     0.782
Rvan_1400
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: binding-protein-dependent transport systems inner membrane component.
  
  
 0.699
Rvan_0505
PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: rpa:RPA1371 putative vanadium nitrogenase protein.
 
     0.619
Rvan_2406
KEGG: rpa:RPA1388 hypothetical protein.
 
     0.597
Rvan_2678
PFAM: major facilitator superfamily MFS_1; KEGG: mrd:Mrad2831_3645 major facilitator transporter.
  
  
 0.560
Rvan_0492
PFAM: periplasmic binding protein; KEGG: avn:Avin_00450 ABC transporter, periplasmic binding protein.
 
  
 0.546
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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