STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_0505PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: rpa:RPA1371 putative vanadium nitrogenase protein. (157 aa)    
Predicted Functional Partners:
Rvan_0506
TIGRFAM: nitrogenase molybdenum-iron cofactor biosynthesis protein NifN; KEGG: rpa:RPA1372 putative nitrogenase cofactor synthesis protein; PFAM: oxidoreductase/nitrogenase component 1.
 
    0.954
Rvan_0507
TIGRFAM: nitrogenase MoFe cofactor biosynthesis protein NifE; KEGG: rpa:RPA1373 putative nitrogenase cofactor synthesis protein; PFAM: oxidoreductase/nitrogenase component 1; Belongs to the NifD/NifK/NifE/NifN family.
 
    0.953
nifW
Nitrogen fixation protein NifW; May protect the nitrogenase Fe-Mo protein from oxidative damage; Belongs to the NifW family.
 
  
 0.812
Rvan_1954
TIGRFAM: nitrogenase molybdenum-iron protein alpha chain; nitrogenase component I, alpha chain; KEGG: msl:Msil_3631 nitrogenase molybdenum-iron protein alpha chain; PFAM: oxidoreductase/nitrogenase component 1.
 
    0.804
Rvan_1957
TIGRFAM: nitrogenase molybdenum-iron cofactor biosynthesis protein NifN; KEGG: mca:MCA0234 nitrogenase molybdenum-iron cofactor biosynthesis protein NifN; PFAM: oxidoreductase/nitrogenase component 1; Belongs to the NifD/NifK/NifE/NifN family.
 
    0.804
Rvan_1955
Nitrogenase molybdenum-iron protein beta chain; This molybdenum-iron protein is part of the nitrogenase complex that catalyzes the key enzymatic reactions in nitrogen fixation; Belongs to the NifD/NifK/NifE/NifN family.
 
    0.803
Rvan_1956
KEGG: mca:MCA0233 nitrogenase iron-molybdenum cofactor biosynthesis protein NifE; TIGRFAM: nitrogenase MoFe cofactor biosynthesis protein NifE; PFAM: oxidoreductase/nitrogenase component 1; BFD domain protein [2Fe-2S]-binding domain protein; Belongs to the NifD/NifK/NifE/NifN family.
 
    0.802
Rvan_1959
Nitrogen fixation protein; KEGG: afr:AFE_1514 hypothetical protein; TIGRFAM: nitrogen fixation protein; PFAM: protein of unknown function DUF269.
 
  
 0.798
Rvan_3437
Nitrogen fixation protein FixT; KEGG: rpe:RPE_4535 NifT/FixU family protein; TIGRFAM: nitrogen fixation protein FixT; PFAM: NifT/FixU family protein.
 
  
 0.793
Rvan_1961
TIGRFAM: ferredoxin III, nif-specific; KEGG: bbt:BBta_5917 ferredoxin-3 (ferredoxin III) (FdIII).
 
    0.785
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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