STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_0534Magnesium chelatase ATPase subunit I; Involved in bacteriochlorophyll biosynthesis; introduces a magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. (342 aa)    
Predicted Functional Partners:
Rvan_0535
Von Willebrand factor type A; KEGG: rce:RC1_2082 magnesium chelatase subunit D; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A.
 
0.998
Rvan_0996
TIGRFAM: magnesium chelatase, H subunit; KEGG: rpt:Rpal_1732 magnesium chelatase subunit H; PFAM: CobN/magnesium chelatase.
 
 
 0.989
Rvan_0994
TIGRFAM: magnesium protoporphyrin O-methyltransferase; KEGG: rce:RC1_2111 Mg-protoporphyrin IX methyl transferase; PFAM: Magnesium-protoporphyrin IX methyltransferase domain protein.
 
 
 0.965
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
   
 
 0.914
Rvan_2693
PFAM: Uncharacterised protein family UPF0093; KEGG: mpo:Mpop_1496 hypothetical protein.
     
 0.903
Rvan_1533
TIGRFAM: cobaltochelatase, CobN subunit; KEGG: rpc:RPC_1889 cobaltochelatase subunit CobN; PFAM: CobN/magnesium chelatase.
 
  
 0.887
Rvan_0536
Magnesium chelatase accessory protein; KEGG: bra:BRADO1609 putative alpha/beta hydrolase, putative protoporphyrin IX magnesium chelatase BchO-like; TIGRFAM: magnesium chelatase accessory protein; PFAM: alpha/beta hydrolase fold.
 
    0.847
Rvan_1002
KEGG: mch:Mchl_5287 bacteriochlorophyll/chlorophyll a synthase; TIGRFAM: bacteriochlorophyll/chlorophyll synthetase; PFAM: UbiA prenyltransferase.
 
  
 0.840
Rvan_1932
KEGG: nwi:Nwi_1701 hypothetical protein.
  
 
 0.802
Rvan_0533
KEGG: ribonuclease BN; TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN.
       0.773
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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