STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_0538PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: bid:Bind_0857 TPR repeat-containing protein. (607 aa)    
Predicted Functional Partners:
Rvan_1262
PFAM: peptidase C14 caspase catalytic subunit p20; Tetratricopeptide TPR_1 repeat-containing protein; KEGG: mno:Mnod_2951 peptidase C14 caspase catalytic subunit P20.
 
 0.735
Rvan_0535
Von Willebrand factor type A; KEGG: rce:RC1_2082 magnesium chelatase subunit D; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A.
     
 0.719
cpoB
Tol-pal system protein YbgF; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family.
 
  
 0.713
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
  
 0.702
Rvan_2467
Radical SAM domain protein; KEGG: gdi:GDI_2405 hypothetical protein; PFAM: Radical SAM domain protein; Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat.
 
   
 0.653
Rvan_3252
PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: tet:TTHERM_00420670 TPR Domain containing protein.
 
 
 0.630
Rvan_2148
KEGG: cak:Caul_0228 polysaccharide deacetylase; PFAM: polysaccharide deacetylase; glycoside hydrolase family 18; glycosyl transferase family 2; SMART: chitinase II.
  
  
 0.621
Rvan_2536
PFAM: surface presentation of antigens (SPOA) protein; KEGG: azc:AZC_0641 FliN protein.
  
  
 0.615
Rvan_3354
KEGG: ava:Ava_4492 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat.
 
 
 0.612
Rvan_3686
Protein of unknown function DUF58; KEGG: sme:SMc02704 hypothetical protein; manually curated; PFAM: protein of unknown function DUF58.
 
  
 0.607
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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