Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rvan_0552KEGG: rfr:Rfer_2818 propionyl-CoA carboxylase; PFAM: carboxyl transferase. (535 aa)    
Predicted Functional Partners:
Rvan_3447
PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; biotin/lipoyl attachment domain-containing protein; KEGG: rfr:Rfer_2815 carbamoyl-phosphate synthase L chain, ATP-binding.
 0.998
Rvan_0702
PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; biotin/lipoyl attachment domain-containing protein; KEGG: rpt:Rpal_2809 carbamoyl-phosphate synthase L chain ATP-binding.
 0.989
Rvan_2585
PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; biotin/lipoyl attachment domain-containing protein; KEGG: xau:Xaut_4726 carbamoyl-phosphate synthase L chain ATP-binding.
 
 0.984
Rvan_3071
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rfr:Rfer_2816 enoyl-CoA hydratase/isomerase.
 
 0.960
Rvan_3420
acetyl-CoA carboxylase, biotin carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
 
 0.955
Rvan_3070
PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: rfr:Rfer_2817 acyl-CoA dehydrogenase-like.
  
 
 0.932
Rvan_0698
PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: mno:Mnod_0289 acyl-CoA dehydrogenase domain protein.
 
 0.837
Rvan_0553
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pfo:Pfl01_3946 short-chain dehydrogenase/reductase SDR.
  
 
 0.795
Rvan_0703
PFAM: pyruvate carboxyltransferase; KEGG: azc:AZC_1996 hydroxymethylglutaryl-CoA lyase.
 
 0.729
Rvan_0558
PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain-containing protein; KEGG: rce:RC1_1743 fatty acid oxidation complex alpha subunit.
  
 
 0.702
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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