Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
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textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Score
Rvan_0562Alkylphosphonate utilization operon protein PhnA; KEGG: bra:BRADO3457 putative Zn-ribbon-containing protein involved in phosphonate metabolism, PhnA-like protein; TIGRFAM: alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein. (118 aa)    
Predicted Functional Partners:
Rvan_0563
KEGG: mex:Mext_2322 hypothetical protein.
       0.613
Rvan_0561
TIGRFAM: serine O-acetyltransferase; KEGG: bid:Bind_0211 serine O-acetyltransferase; PFAM: transferase hexapeptide repeat containing protein.
       0.476
rplQ
KEGG: rru:Rru_A2663 50S ribosomal protein L17P; TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17.
   
    0.468
Rvan_1523
KEGG: mrd:Mrad2831_3856 phosphonate C-P lyase system protein PhnH; TIGRFAM: phosphonate C-P lyase system protein PhnH; PFAM: phosphonate metabolism.
     
 0.450
Rvan_2292
PFAM: Polyprenyl synthetase; KEGG: bid:Bind_0855 polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
      0.433
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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