STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_0574KEGG: msl:Msil_3525 hypothetical protein. (166 aa)    
Predicted Functional Partners:
Rvan_3436
KEGG: rpc:RPC_4465 hypothetical protein.
 
     0.776
Rvan_3440
PFAM: LRV FeS4 cluster domain protein; KEGG: bbt:BBta_5900 hypothetical protein.
 
     0.773
Rvan_3438
PFAM: NifZ family protein; KEGG: msl:Msil_3640 NifZ family protein.
 
     0.771
Rvan_1950
KEGG: lch:Lcho_1428 hypothetical protein.
  
     0.742
Rvan_1948
KEGG: rpe:RPE_4369 nitrogenase-associated protein; TIGRFAM: nitrogenase-associated protein; PFAM: arsenate reductase and related; Belongs to the ArsC family.
 
     0.721
Rvan_3434
KEGG: msl:Msil_3634 hypothetical protein.
 
     0.682
Rvan_1483
KEGG: sfu:Sfum_3853 hypothetical protein.
   
 0.680
Rvan_1960
PFAM: protein of unknown function DUF683; KEGG: xau:Xaut_0095 hypothetical protein.
 
     0.662
Rvan_2298
PFAM: Stress-induced protein, KGG, repeat; KEGG: bid:Bind_3101 hypothetical protein.
  
     0.655
Rvan_1949
KEGG: xau:Xaut_0125 hypothetical protein.
 
   0.639
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.