STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_0576KEGG: rde:RD1_1739 hypothetical protein. (200 aa)    
Predicted Functional Partners:
Rvan_0577
KEGG: tmz:Tmz1t_3494 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.961
Rvan_0579
KEGG: ilo:IL2266 hypothetical protein.
 
  
 0.960
Rvan_0578
PFAM: protein of unknown function DUF214; KEGG: rde:RD1_1737 peptide ABC transporter, permease component, putative.
 
     0.953
znuC
ABC transporter related protein; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family.
  
  
 0.713
rpmJ
KEGG: bid:Bind_0085 ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.
   
  
 0.593
Rvan_0575
PFAM: protein of unknown function DUF1007; KEGG: rpe:RPE_4805 hypothetical protein.
       0.574
Rvan_3057
PFAM: ABC-3 protein; KEGG: tgr:Tgr7_2749 ABC-3 protein.
  
  
 0.569
Rvan_3055
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: rpc:RPC_0489 ferric uptake regulator family protein; Belongs to the Fur family.
  
  
 0.487
Rvan_3517
KEGG: oca:OCAR_4436 hypothetical protein.
  
   
 0.442
Rvan_2357
KEGG: TRAP-type uncharacterized transport system periplasmic protein.
  
     0.434
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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