Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_0579KEGG: ilo:IL2266 hypothetical protein. (191 aa)    
Predicted Functional Partners:
Rvan_0576
KEGG: rde:RD1_1739 hypothetical protein.
 
  
 0.964
Rvan_0577
KEGG: tmz:Tmz1t_3494 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.947
Rvan_0578
PFAM: protein of unknown function DUF214; KEGG: rde:RD1_1737 peptide ABC transporter, permease component, putative.
 
     0.945
Rvan_0575
PFAM: protein of unknown function DUF1007; KEGG: rpe:RPE_4805 hypothetical protein.
       0.508
Rvan_0194
KEGG: bid:Bind_2068 poly (3-hydroxybutyrate) depolymerase.
  
    0.459
Rvan_0307
KEGG: sit:TM1040_0952 hypothetical protein.
  
     0.415
Rvan_3517
KEGG: oca:OCAR_4436 hypothetical protein.
  
     0.403
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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