Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rvan_0580PFAM: NnrS family protein; KEGG: rhi:NGR_c09940 putative membrane protein, NnrS-like protein. (415 aa)    
Predicted Functional Partners:
Rvan_0581
KEGG: smd:Smed_6276 CRP/FNR family transcriptional regulator; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp.
 
   
 0.792
Rvan_2939
KEGG: acr:Acry_3474 hypothetical protein.
 
    0.777
Rvan_2941
PFAM: peptidase U32; KEGG: acr:Acry_3476 peptidase U32.
 
    0.754
Rvan_2940
PFAM: peptidase U32; KEGG: acr:Acry_3475 peptidase U32.
 
    0.724
Rvan_1605
KEGG: pla:Plav_3577 NnrU family protein.
 
     0.571
Rvan_2750
PFAM: globin; KEGG: globin; Belongs to the globin family.
  
  
 0.473
Rvan_2924
Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
  
 0.460
Rvan_2927
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; KEGG: mmr:Mmar10_1149 cytochrome c oxidase, cbb3-type, subunit I; PFAM: cytochrome c oxidase subunit I; Belongs to the heme-copper respiratory oxidase family.
 
   
 0.429
Rvan_2923
TIGRFAM: cytochrome c oxidase accessory protein CcoG; KEGG: pla:Plav_1528 cytochrome c oxidase cbb3 type accessory protein FixG.
 
    0.418
Rvan_2926
KEGG: rpc:RPC_0014 cytochrome c oxidase, cbb3-type, subunit II; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO.
 
   
 0.413
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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