STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_0591Hypothetical protein; KEGG: mag:amb3376 Hdr-like menaquinol oxidoreductase cytochrome c subunit. (150 aa)    
Predicted Functional Partners:
Rvan_0593
Putative reductase, iron-sulfur binding subunit; KEGG: alv:Alvin_1258 DsrK.
 
    0.962
Rvan_0590
KEGG: aeh:Mlg_1663 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
 
  
 0.960
Rvan_0594
PFAM: Nitrate reductase gamma subunit; KEGG: aeh:Mlg_1659 nitrate reductase, gamma subunit.
 
    0.953
Rvan_0592
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mag:amb3375 putative glutamate synthase (NADPH) small subunit.
 
    0.945
Rvan_0589
PFAM: Polysulphide reductase NrfD; KEGG: tbd:Tbd_2474 molybdopterin oxidoreductase, membrane subunit.
 
  
 0.942
Rvan_0595
KEGG: mag:amb3372 dissimilatory sulfite reductase; TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family; PFAM: DsrC family protein.
 
     0.908
Rvan_0588
KEGG: tgr:Tgr7_2197 cobyrinic acid a,c-diamide synthase; TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: CobB/CobQ domain protein glutamine amidotransferase.
 
     0.905
Rvan_0599
TIGRFAM: sulfite reductase, dissimilatory-type beta subunit; KEGG: aeh:Mlg_1654 sulfite reductase, dissimilatory-type beta subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein.
 
    0.895
Rvan_0596
KEGG: tgr:Tgr7_2189 sulfur relay protein TusB/DsrH; TIGRFAM: sulfur relay protein TusB/DsrH; PFAM: DsrH family protein.
 
     0.893
Rvan_0597
KEGG: rma:Rmag_0867 DsrE family protein; TIGRFAM: sulfur relay protein TusC/DsrF; PFAM: DsrE family protein.
 
     0.887
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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