STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_0604PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sqr; sulfide:quinone oxidoreductase. (425 aa)    
Predicted Functional Partners:
Rvan_0600
TIGRFAM: sulfite reductase, dissimilatory-type alpha subunit; KEGG: alv:Alvin_1251 DsrA; PFAM: nitrite and sulphite reductase 4Fe-4S region.
  
 
  0.929
Rvan_0599
TIGRFAM: sulfite reductase, dissimilatory-type beta subunit; KEGG: aeh:Mlg_1654 sulfite reductase, dissimilatory-type beta subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein.
  
 
  0.922
Rvan_1351
PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; KEGG: rpd:RPD_1381 nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like.
     
 0.911
Rvan_3389
PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: rru:Rru_A0098 cystathionine gamma-synthase.
   
  0.909
metZ
O-succinylhomoserine sulfhydrylase; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide.
   
  0.909
Rvan_3595
PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: azl:AZL_c02520 cystathionine gamma-synthase.
   
  0.909
Rvan_2359
KEGG: rhi:NGR_c36850 cysteine synthase A; TIGRFAM: cysteine synthase A; cysteine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit.
     
 0.902
Rvan_2944
PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: pla:Plav_2990 pyridoxal-5'-phosphate-dependent protein beta subunit.
     
 0.902
Rvan_3609
KEGG: cysteine synthase A; TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit.
     
 0.902
Rvan_2522
PFAM: acriflavin resistance protein; KEGG: oca:OCAR_6818 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
     0.735
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
Server load: medium (60%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.