STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_0621KEGG: azl:AZL_009640 thiamine-phosphate pyrophosphorylase. (192 aa)    
Predicted Functional Partners:
thiL
Thiamine-monophosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family.
     
  0.900
Rvan_0862
Thiamine-phosphate pyrophosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP).
     
  0.900
Rvan_1563
KEGG: hne:HNE_3483 alkaline phosphatase; PFAM: Alkaline phosphatase; SMART: Alkaline phosphatase; Belongs to the alkaline phosphatase family.
     
  0.900
Rvan_2133
KEGG: bja:bll5905 phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1.
     
  0.900
Rvan_2170
KEGG: pla:Plav_3493 pyrrolo-quinoline quinone; PFAM: Pyrrolo-quinoline quinone repeat-containing protein; SMART: Pyrrolo-quinoline quinone beta-propeller repeat.
  
     0.740
Rvan_0547
PFAM: Uncharacterised conserved protein UCP032146; KEGG: rhi:NGR_c02250 hypothetical protein; Belongs to the UPF0262 family.
  
     0.673
Rvan_3486
PFAM: protein of unknown function DUF583; KEGG: rsq:Rsph17025_1854 hypothetical protein.
  
     0.656
Rvan_0227
PFAM: dihydroneopterin aldolase; KEGG: bid:Bind_3577 dihydroneopterin aldolase.
  
     0.560
Rvan_2299
PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: Orn/DAP/Arg decarboxylase 2; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
  
     0.515
Rvan_0620
TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: pla:Plav_2107 glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
       0.510
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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