Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rvan_0627KEGG: oca:OCAR_4056 nuclease; PFAM: nuclease (SNase domain-containing protein); SMART: nuclease (SNase domain-containing protein). (287 aa)    
Predicted Functional Partners:
Rvan_0131
PFAM: protein of unknown function DUF1457; KEGG: pla:Plav_0872 hypothetical protein.
  
     0.742
Rvan_1306
KEGG: pla:Plav_3330 hypothetical protein.
  
     0.649
Rvan_1859
PFAM: AsmA family protein; KEGG: azc:AZC_4482 hypothetical protein.
  
     0.634
Rvan_3302
KEGG: putative TolA.
 
   
 0.581
Rvan_2945
KEGG: msl:Msil_1227 hypothetical protein.
  
     0.548
Rvan_1932
KEGG: nwi:Nwi_1701 hypothetical protein.
  
     0.530
Rvan_0737
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
  
  
 0.517
Rvan_0075
KEGG: pla:Plav_3269 hypothetical protein.
  
     0.516
Rvan_3195
PFAM: protein of unknown function DUF1465; KEGG: mch:Mchl_2633 protein of unknown function DUF1465.
  
     0.515
Rvan_1631
PFAM: Extracellular ligand-binding receptor; KEGG: pla:Plav_3584 extracellular ligand-binding receptor.
  
     0.513
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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