STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_0638KEGG: rpc:RPC_4934 hypothetical protein. (95 aa)    
Predicted Functional Partners:
Rvan_0637
KEGG: rpe:RPE_3894 cytochrome b561.
 
     0.943
Rvan_2027
KEGG: acr:Acry_3424 cytochrome b561.
 
     0.698
Rvan_0639
Hypothetical protein; KEGG: rpc:RPC_4933 peptidase.
 
     0.616
Rvan_0641
KEGG: rpc:RPC_4931 periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein.
       0.553
Rvan_0640
Two component transcriptional regulator, winged helix family; KEGG: rpe:RPE_4899 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver.
  
    0.525
Rvan_2955
Hypothetical protein; KEGG: rpc:RPC_4933 peptidase.
 
     0.434
Rvan_0956
PFAM: Cupin 2 conserved barrel domain protein; KEGG: mlo:mlr1626 hypothetical protein.
  
     0.432
Rvan_0194
KEGG: bid:Bind_2068 poly (3-hydroxybutyrate) depolymerase.
  
     0.407
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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