STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_0643KEGG: azc:AZC_4256 peptidase S16 protein; PFAM: peptidase S16 lon domain protein; SMART: peptidase S16 lon domain protein. (225 aa)    
Predicted Functional Partners:
Rvan_0644
Thioredoxin; KEGG: azc:AZC_4257 thioredoxin precursor; TIGRFAM: thioredoxin; PFAM: Thioredoxin domain-containing protein.
 
  
 0.841
Rvan_0642
PFAM: protein of unknown function DUF343; KEGG: hypothetical protein; Belongs to the UPF0434 family.
       0.609
Rvan_0129
PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: pla:Plav_3646 UBA/ThiF-type NAD/FAD binding protein.
    
 0.495
Rvan_0645
PFAM: transferase hexapeptide repeat containing protein; KEGG: rsp:RSP_7375 putative colanic acid biosynthesis acetyltransferase WcaF.
       0.450
mdh
Malate dehydrogenase, NAD-dependent; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.
  
   0.410
Rvan_2172
PFAM: DNA polymerase III chi subunit HolC; KEGG: DNA polymerase III chi subunit HolC.
  
     0.403
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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