STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_0660PFAM: glycosyl transferase family 39; KEGG: met:M446_5864 glycosyl transferase family protein. (537 aa)    
Predicted Functional Partners:
Rvan_2632
PFAM: glycosyl transferase family 2; KEGG: glycosyl transferase family 2.
 
  
 0.911
Rvan_2725
KEGG: alv:Alvin_1358 dolichyl-phosphate beta-D-mannosyltransferase; PFAM: glycosyl transferase family 2; GtrA family protein.
 
  
 0.738
Rvan_0770
PFAM: glycosyl transferase family 2; KEGG: mms:mma_2834 hypothetical protein.
 
  
 0.733
Rvan_2724
PFAM: glycosyl transferase family 39; KEGG: rpb:RPB_3657 glycosyl transferase family protein.
 
     0.629
Rvan_2633
PFAM: lipid A biosynthesis domain protein; KEGG: azl:AZL_e02820 lipid-A-disaccharide synthase.
 
     0.596
Rvan_2922
PFAM: FixH family protein; KEGG: pzu:PHZ_c2809 ferredoxin.
  
     0.577
Rvan_2007
PFAM: protein of unknown function DUF1009; KEGG: protein of unknown function DUF1009.
  
     0.561
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
  
 0.549
Rvan_3546
PFAM: lipid A biosynthesis acyltransferase; KEGG: mlo:mlr1179 lipid A biosynthesis lauroyl acyltransferase.
 
   
 0.502
Rvan_0877
PFAM: permease YjgP/YjgQ family protein; KEGG: mno:Mnod_5836 permease YjgP/YjgQ family protein.
 
     0.493
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.