STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_0670KEGG: mch:Mchl_1972 N-acetylmuramoyl-L-alanine amidase family 2; PFAM: N-acetylmuramoyl-L-alanine amidase family 2; SMART: Animal peptidoglycan recognition protein PGRP; N-acetylmuramoyl-L-alanine amidase family 2. (204 aa)    
Predicted Functional Partners:
Rvan_3458
PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: oan:Oant_3124 ATPase BadF/BadG/BcrA/BcrD type.
  
    0.550
rpmB
KEGG: met:M446_3667 ribosomal protein L28; TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
       0.445
Rvan_0196
Hypothetical protein; KEGG: mlo:mll9166 glycosy hydrolase family protein.
  
  
 0.444
Rvan_0636
PFAM: glycoside hydrolase family 3 domain protein; KEGG: dvl:Dvul_1003 glycoside hydrolase family 3 protein.
  
  
 0.444
Rvan_1922
PFAM: glycoside hydrolase family 3 domain protein; KEGG: mex:Mext_3398 beta-N-acetylhexosaminidase.
  
  
 0.444
Rvan_2702
PFAM: glycoside hydrolase family 3 domain protein; KEGG: rru:Rru_A3299 glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 3 family.
  
  
 0.444
Rvan_2642
PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; thiamine pyrophosphate central domain-containing protein; KEGG: rfr:Rfer_2478 thiamine pyrophosphate enzyme-like TPP binding protein; Belongs to the TPP enzyme family.
  
     0.434
Rvan_0671
KEGG: msl:Msil_2455 cyclic nucleotide-binding protein; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding.
       0.426
Rvan_2412
D-lactate dehydrogenase (cytochrome); KEGG: FAD linked oxidase domain protein; PFAM: FAD linked oxidase domain protein.
 
     0.408
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.