STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vapC-2PilT protein domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. (128 aa)    
Predicted Functional Partners:
Rvan_0699
TIGRFAM: transcriptional regulator, AbrB family; KEGG: gox:GOX2681 hypothetical protein.
       0.679
Rvan_0701
KEGG: nha:Nham_2125 propionyl-CoA carboxylase; PFAM: carboxyl transferase.
       0.537
Rvan_0702
PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; biotin/lipoyl attachment domain-containing protein; KEGG: rpt:Rpal_2809 carbamoyl-phosphate synthase L chain ATP-binding.
       0.532
Rvan_0703
PFAM: pyruvate carboxyltransferase; KEGG: azc:AZC_1996 hydroxymethylglutaryl-CoA lyase.
       0.532
Rvan_0698
PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: mno:Mnod_0289 acyl-CoA dehydrogenase domain protein.
 
     0.515
Rvan_1646
PFAM: GTP-binding protein HSR1-related; KEGG: tkm:TK90_0656 GTP-binding protein HSR1-related protein.
  
     0.469
Rvan_1645
KEGG: aeh:Mlg_1600 hypothetical protein.
  
     0.424
Rvan_1883
KEGG: net:Neut_2225 CRISPR-associated NE0113 family protein; TIGRFAM: CRISPR-associated protein, NE0113 family; PFAM: CRISPR-assoc protein, NE0113/Csx13.
  
     0.417
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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