STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_0720PFAM: protein of unknown function DUF1328; KEGG: pat:Patl_4137 hypothetical protein. (57 aa)    
Predicted Functional Partners:
Rvan_3392
PFAM: CsbD family protein; KEGG: noc:Noc_0274 CsbD-like protein; Belongs to the UPF0337 (CsbD) family.
 
  
 0.927
Rvan_2199
PFAM: CsbD family protein; KEGG: azl:AZL_012380 hypothetical protein; Belongs to the UPF0337 (CsbD) family.
  
    0.813
Rvan_0722
KEGG: rce:RC1_1351 diacylglycerol kinase catalytic domain protein, putative; PFAM: diacylglycerol kinase catalytic region; SMART: diacylglycerol kinase catalytic region.
       0.618
Rvan_0721
PFAM: metallophosphoesterase; KEGG: mpo:Mpop_4935 metallophosphoesterase.
       0.598
Rvan_0786
KEGG: rlt:Rleg2_1411 periplasmic protein-like protein.
  
  
 0.514
Rvan_2271
KEGG: mno:Mnod_3611 hypothetical protein.
  
    0.485
Rvan_2470
PFAM: ABC-2 type transporter; KEGG: azc:AZC_0040 putative capsule polysaccharide export inner-membrane protein.
   
    0.445
glmS
Glucosamine/fructose-6-phosphate aminotransferase, isomerizing; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
   
    0.436
Rvan_2472
KEGG: azc:AZC_0042 putative ABC-2 transporter; PFAM: ABC transporter related; SMART: AAA ATPase.
   
    0.436
Rvan_2507
KEGG: mlo:mlr3700 two-component response regulator; PFAM: response regulator receiver; Sigma-70 region 4 type 2; SMART: response regulator receiver.
 
     0.427
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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