STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_0747PFAM: protein of unknown function DUF162; KEGG: xau:Xaut_1767 hypothetical protein. (236 aa)    
Predicted Functional Partners:
Rvan_0748
KEGG: mes:Meso_0368 iron-sulfur cluster binding protein; TIGRFAM: iron-sulfur cluster binding protein; PFAM: protein of unknown function DUF162.
 
 0.999
Rvan_3667
PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: tgr:Tgr7_3164 protein of unknown function DUF224 cysteine-rich region domain protein.
 
 
 0.945
Rvan_2412
D-lactate dehydrogenase (cytochrome); KEGG: FAD linked oxidase domain protein; PFAM: FAD linked oxidase domain protein.
  
 
 0.844
Rvan_3239
PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: met:M446_1761 hypothetical protein.
 
 
 0.758
Rvan_0593
Putative reductase, iron-sulfur binding subunit; KEGG: alv:Alvin_1258 DsrK.
  
 
 0.713
ackA
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
  
  
 0.660
Rvan_0258
PFAM: malic protein NAD-binding; malic protein domain protein; phosphate acetyl/butaryl transferase; KEGG: mlo:mlr5329 malic enzyme.
  
  
 0.568
Rvan_0888
L-lactate transport; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.
 
  
 0.568
Rvan_1566
PFAM: malic protein NAD-binding; malic protein domain protein; phosphate acetyl/butaryl transferase; KEGG: rce:RC1_0405 malic enzyme.
  
  
 0.568
Rvan_0749
PFAM: Ferritin Dps family protein; KEGG: scl:sce7884 Dps family DNA-binding ferritin-like protein; Belongs to the Dps family.
       0.541
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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