Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rvan_0748KEGG: mes:Meso_0368 iron-sulfur cluster binding protein; TIGRFAM: iron-sulfur cluster binding protein; PFAM: protein of unknown function DUF162. (499 aa)    
Predicted Functional Partners:
Rvan_0747
PFAM: protein of unknown function DUF162; KEGG: xau:Xaut_1767 hypothetical protein.
 
 0.999
Rvan_3667
PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: tgr:Tgr7_3164 protein of unknown function DUF224 cysteine-rich region domain protein.
 
 0.994
Rvan_2412
D-lactate dehydrogenase (cytochrome); KEGG: FAD linked oxidase domain protein; PFAM: FAD linked oxidase domain protein.
 
 
 0.866
Rvan_3239
PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: met:M446_1761 hypothetical protein.
 
 
 0.812
Rvan_0593
Putative reductase, iron-sulfur binding subunit; KEGG: alv:Alvin_1258 DsrK.
  
 
 0.686
Rvan_0888
L-lactate transport; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.
 
   
 0.550
Rvan_0749
PFAM: Ferritin Dps family protein; KEGG: scl:sce7884 Dps family DNA-binding ferritin-like protein; Belongs to the Dps family.
       0.529
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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