STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_0764PFAM: Methyltransferase type 11; KEGG: cak:Caul_2158 methyltransferase type 11. (352 aa)    
Predicted Functional Partners:
cobB
PFAM: Silent information regulator protein Sir2; KEGG: rce:RC1_2898 NAD-dependent deacetylase; Belongs to the sirtuin family. Class III subfamily.
       0.557
Rvan_0765
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cag:Cagg_0860 short-chain dehydrogenase/reductase SDR.
       0.497
bioB
Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
  
  
 0.461
Rvan_0528
PFAM: glycosyl transferase group 1; KEGG: mpo:Mpop_1613 glycosyl transferase group 1.
  
     0.460
Rvan_2641
PFAM: Methyltransferase type 11; KEGG: rec:RHECIAT_PA0000348 probable methyltransferase protein.
  
     0.428
Rvan_0762
TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; YHS domain-containing protein; Haloacid dehalogenase domain protein hydrolase; KEGG: pzu:PHZ_c1055 heavy-metal transporting P-type ATPase; SMART: TRASH domain-containing protein.
       0.414
Rvan_0068
PFAM: ABC-1 domain-containing protein; KEGG: ABC-1 domain protein.
 
  
 0.410
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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