Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
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Co-expression
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[Homology]
Score
Rvan_0768PFAM: YdjC family protein; KEGG: mei:Msip34_1280 YdjC family protein. (267 aa)    
Predicted Functional Partners:
Rvan_0769
PFAM: GtrA family protein; KEGG: aav:Aave_0598 GtrA family protein.
 
     0.945
Rvan_0770
PFAM: glycosyl transferase family 2; KEGG: mms:mma_2834 hypothetical protein.
 
  
 0.911
Rvan_0771
PFAM: YceI family protein; KEGG: hba:Hbal_1165 cytochrome b561; Belongs to the UPF0312 family.
       0.545
Rvan_0772
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: xau:Xaut_4172 glyoxalase/bleomycin resistance protein/dioxygenase.
       0.525
Rvan_0660
PFAM: glycosyl transferase family 39; KEGG: met:M446_5864 glycosyl transferase family protein.
 
  
 0.513
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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