STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_0770PFAM: glycosyl transferase family 2; KEGG: mms:mma_2834 hypothetical protein. (343 aa)    
Predicted Functional Partners:
Rvan_0769
PFAM: GtrA family protein; KEGG: aav:Aave_0598 GtrA family protein.
 
  
 0.932
Rvan_0768
PFAM: YdjC family protein; KEGG: mei:Msip34_1280 YdjC family protein.
 
  
 0.908
Rvan_0660
PFAM: glycosyl transferase family 39; KEGG: met:M446_5864 glycosyl transferase family protein.
 
  
 0.733
Rvan_0185
PFAM: NAD-dependent epimerase/dehydratase; KEGG: tmz:Tmz1t_3455 NAD-dependent epimerase/dehydratase.
 
 
 0.651
Rvan_2725
KEGG: alv:Alvin_1358 dolichyl-phosphate beta-D-mannosyltransferase; PFAM: glycosyl transferase family 2; GtrA family protein.
 
  
 0.638
Rvan_0420
Glutamine--scyllo-inositol transaminase; KEGG: tel:tlr1344 putative aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.611
Rvan_0771
PFAM: YceI family protein; KEGG: hba:Hbal_1165 cytochrome b561; Belongs to the UPF0312 family.
       0.545
Rvan_0772
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: xau:Xaut_4172 glyoxalase/bleomycin resistance protein/dioxygenase.
       0.525
Rvan_0398
PFAM: sugar transferase; KEGG: cpb:Cphamn1_0384 sugar transferase.
  
  
 0.496
Rvan_0435
PFAM: sugar transferase; KEGG: cpb:Cphamn1_0384 sugar transferase.
  
  
 0.496
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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