STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_0771PFAM: YceI family protein; KEGG: hba:Hbal_1165 cytochrome b561; Belongs to the UPF0312 family. (374 aa)    
Predicted Functional Partners:
Rvan_0772
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: xau:Xaut_4172 glyoxalase/bleomycin resistance protein/dioxygenase.
  
    0.751
Rvan_0768
PFAM: YdjC family protein; KEGG: mei:Msip34_1280 YdjC family protein.
       0.545
Rvan_0769
PFAM: GtrA family protein; KEGG: aav:Aave_0598 GtrA family protein.
       0.545
Rvan_0770
PFAM: glycosyl transferase family 2; KEGG: mms:mma_2834 hypothetical protein.
       0.545
Rvan_2231
PFAM: YceI family protein; KEGG: hypothetical protein; Belongs to the UPF0312 family.
 
  
0.491
gpmA
Phosphoglycerate mutase 1 family; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily.
  
    0.476
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.