STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_0773KEGG: oan:Oant_1923 cold-shock DNA-binding domain-containing protein; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein. (191 aa)    
Predicted Functional Partners:
Rvan_0774
PFAM: protein of unknown function DUF192; KEGG: bid:Bind_1551 hypothetical protein.
  
    0.761
Rvan_1549
KEGG: mlo:msr2658 cold shock protein; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein.
  
     0.759
Rvan_0775
KEGG: app:CAP2UW1_0645 hypothetical protein.
       0.712
Rvan_1371
KEGG: oan:Oant_2153 hypothetical protein.
  
     0.688
Rvan_1935
KEGG: bqu:BQ07600 hypothetical protein.
  
     0.688
Rvan_0447
KEGG: rpe:RPE_1474 hypothetical protein.
  
 
 
 0.664
Rvan_0922
KEGG: rpc:RPC_4252 hypothetical protein.
  
 
 0.652
Rvan_1740
PFAM: Invasion associated locus B family protein; KEGG: oca:OCAR_4683 invasion associated locus B.
  
     0.643
Rvan_0926
Hypothetical protein; KEGG: mno:Mnod_3620 flagellar export protein FliJ.
  
     0.633
Rvan_0917
PFAM: protein of unknown function DUF1150; KEGG: oca:OCAR_4463 hypothetical protein.
  
     0.612
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.