STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_0780PFAM: FAD linked oxidase domain protein; KEGG: rhi:NGR_c04820 FAD dependent oxidoreductase. (483 aa)    
Predicted Functional Partners:
Rvan_0781
KEGG: pla:Plav_0739 hypothetical protein.
  
    0.778
Rvan_0782
TIGRFAM: DNA-3-methyladenine glycosylase I; KEGG: msl:Msil_1101 DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase.
       0.689
Rvan_0783
KEGG: mno:Mnod_0691 folate-binding protein YgfZ; TIGRFAM: folate-binding protein YgfZ; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; Belongs to the GcvT family.
       0.689
Rvan_3239
PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: met:M446_1761 hypothetical protein.
  
 0.583
lldD
FMN-dependent alpha-hydroxy acid dehydrogenase; Catalyzes the conversion of L-lactate to pyruvate. Is coupled to the respiratory chain; Belongs to the FMN-dependent alpha-hydroxy acid dehydrogenase family.
 0.570
Rvan_0460
PFAM: Male sterility domain; short-chain dehydrogenase/reductase SDR; KEGG: app:CAP2UW1_3348 male sterility domain protein.
  
  
 0.545
Rvan_1644
KEGG: xau:Xaut_0477 glutamate synthase (ferredoxin); PFAM: glutamine amidotransferase class-II; glutamate synthase; ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein.
     
 0.537
Rvan_3503
PFAM: Electron transfer flavoprotein alpha subunit; Electron transfer flavoprotein alpha/beta-subunit; KEGG: pla:Plav_1607 electron transfer flavoprotein alpha subunit.
 
 
 0.525
Rvan_3504
PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: mrd:Mrad2831_2960 electron transfer flavoprotein alpha/beta-subunit.
 
 
 0.512
Rvan_0258
PFAM: malic protein NAD-binding; malic protein domain protein; phosphate acetyl/butaryl transferase; KEGG: mlo:mlr5329 malic enzyme.
  
  
 0.493
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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