STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_0786KEGG: rlt:Rleg2_1411 periplasmic protein-like protein. (374 aa)    
Predicted Functional Partners:
Rvan_3656
PFAM: cobalamin (vitamin B12) biosynthesis CbiG protein; KEGG: bbt:BBta_3151 putative CobE protein.
  
     0.560
Rvan_0720
PFAM: protein of unknown function DUF1328; KEGG: pat:Patl_4137 hypothetical protein.
  
  
 0.514
Rvan_3036
PFAM: OmpA/MotB domain protein; KEGG: mno:Mnod_1486 OmpA/MotB domain protein.
  
    0.483
Rvan_0785
EF-Hand, Calmodulin; KEGG: cak:Caul_3284 signal transduction protein; PFAM: EF-Hand, Calmodulin; SMART: Calcium-binding EF-hand-containing protein.
       0.461
Rvan_1498
PFAM: OmpA/MotB domain protein; KEGG: rpe:RPE_0907 OmpA/MotB domain-containing protein.
  
    0.433
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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