Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Rvan_0794Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rpd:RPD_4197 LysR, substrate-binding; Belongs to the LysR transcriptional regulatory family. (311 aa)    
Predicted Functional Partners:
Rvan_2198
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: xau:Xaut_2573 LysR family transcriptional regulator.
  
     0.652
Rvan_0795
PFAM: protein of unknown function DUF6 transmembrane; KEGG: rpd:RPD_4196 hypothetical protein.
 
    0.639
Rvan_1644
KEGG: xau:Xaut_0477 glutamate synthase (ferredoxin); PFAM: glutamine amidotransferase class-II; glutamate synthase; ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein.
     
 0.633
Rvan_2154
PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: transcriptional regulator, LysR family.
  
     0.611
Rvan_3242
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bmi:BMEA_B0178 hypothetical protein.
  
     0.610
Rvan_0296
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: azc:AZC_4162 regulatory protein; Belongs to the LysR transcriptional regulatory family.
  
     0.576
Rvan_2193
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rpc:RPC_1679 LysR family transcriptional regulator.
  
     0.572
Rvan_1598
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: hch:HCH_06316 transcriptional regulator.
  
     0.556
Rvan_3187
KEGG: bmr:BMI_II175 transcriptional regulator, LysR family; manually curated; PFAM: regulatory protein LysR; LysR substrate-binding.
  
     0.482
Rvan_0014
PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: transcriptional regulator, LysR family.
  
     0.461
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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