STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_0804KEGG: mrd:Mrad2831_4813 anti-sigma-factor antagonist. (108 aa)    
Predicted Functional Partners:
Rvan_2319
KEGG: pla:Plav_2513 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
   
   0.966
Rvan_2320
PFAM: Mammalian cell entry related domain protein; KEGG: xau:Xaut_4115 hypothetical protein.
  
   0.961
Rvan_2552
KEGG: mch:Mchl_0704 hypothetical protein.
   
    0.960
Rvan_2562
KEGG: bid:Bind_3557 flagellar hook protein FlgE; TIGRFAM: flagellar hook-basal body protein; PFAM: flagellar basal body FlaE domain protein; flagellar basal body rod protein; protein of unknown function DUF1078 domain protein.
   
    0.960
Rvan_2318
PFAM: protein of unknown function DUF140; KEGG: mrd:Mrad2831_1952 hypothetical protein.
   
   0.959
flgH
Flagellar L-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
   
    0.887
Rvan_2534
PFAM: flagellar basal body rod protein; KEGG: bid:Bind_3656 flagellar basal body rod protein FlgB; Belongs to the flagella basal body rod proteins family.
   
    0.872
Rvan_2548
PFAM: flagellar motor switch protein FliG; KEGG: bid:Bind_2807 flagellar motor switch protein FliG.
  
   0.861
Rvan_2571
Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
  
    0.824
Rvan_2537
KEGG: mlo:mll2905 flagellar motor protein MotA.
  
    0.807
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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