Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rvan_0819PFAM: Extracellular ligand-binding receptor; KEGG: mes:Meso_3328 extracellular ligand-binding receptor. (366 aa)    
Predicted Functional Partners:
Rvan_0823
PFAM: inner-membrane translocator; KEGG: bja:blr5672 ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.997
Rvan_0824
PFAM: inner-membrane translocator; KEGG: mes:Meso_3323 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 0.995
Rvan_0822
KEGG: ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.959
Rvan_2960
KEGG: met:M446_1796 ABC transporter related; PFAM: ABC transporter related; inner-membrane translocator; SMART: AAA ATPase; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.958
Rvan_1843
KEGG: rpt:Rpal_0733 ABC transporter related; PFAM: ABC transporter related; inner-membrane translocator; SMART: AAA ATPase; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.943
Rvan_1845
PFAM: Extracellular ligand-binding receptor; KEGG: rpe:RPE_0593 extracellular ligand-binding receptor.
  
  
 0.940
Rvan_0821
KEGG: mes:Meso_3326 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.925
Rvan_2958
PFAM: Extracellular ligand-binding receptor; KEGG: mno:Mnod_1164 extracellular ligand-binding receptor.
  
  
 
0.923
Rvan_0896
PFAM: Extracellular ligand-binding receptor; KEGG: xau:Xaut_1437 extracellular ligand-binding receptor.
     
  0.900
Rvan_0820
KEGG: mrd:Mrad2831_2253 hypothetical protein.
 
     0.887
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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