Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Rvan_0838KEGG: vpa:VPA1236 inner membrane protein YjeH. (87 aa)    
Predicted Functional Partners:
Rvan_0834
KEGG: bra:BRADO4833 hypothetical protein.
       0.527
Rvan_0835
PFAM: glycosyl transferase group 1; KEGG: mmb:Mmol_1787 glycosyl transferase group 1.
       0.527
Rvan_0836
Glycosyl transferase, WecB/TagA/CpsF family; KEGG: mlo:mlr6502 putative N-acetyl-mannosamine transferase; TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; Belongs to the glycosyltransferase 26 family.
       0.527
Rvan_0837
KEGG: tgr:Tgr7_2378 hypothetical protein.
       0.527
Rvan_0839
PFAM: polysaccharide export protein; Soluble ligand binding domain; KEGG: mno:Mnod_5609 polysaccharide export protein.
       0.479
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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