STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_0841PFAM: glycosyl transferase family 2; KEGG: rce:RC1_3994 glycosyl transferase, group 2 family protein. (315 aa)    
Predicted Functional Partners:
Rvan_0840
KEGG: pla:Plav_1925 sugar transferase; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.
 
  
 0.887
Rvan_0832
PFAM: NAD-dependent epimerase/dehydratase; KEGG: rhi:NGR_b13380 UDP-glucose 4-epimerase.
 
 
 0.778
Rvan_0417
PFAM: glycosyl transferase family 2; KEGG: glycosyl transferase family 2.
 
 
 0.774
Rvan_0843
Glucose-1-phosphate cytidylyltransferase; KEGG: bov:BOV_A0382 nucleotidyltransferase family protein.
 
 
 0.713
Rvan_0842
PFAM: LmbE family protein; KEGG: bra:BRADO4834 putative deacetylase.
 
   
 0.710
Rvan_0844
PFAM: C-methyltransferase; Methyltransferase domain protein; KEGG: rhi:NGR_b13420 methyltransferase.
 
  
 0.708
Rvan_0833
PFAM: Protein of unknown function DUF2172, aminopeptidase-like; KEGG: scb:SCAB_23491 hypothetical protein.
 
     0.632
Rvan_0398
PFAM: sugar transferase; KEGG: cpb:Cphamn1_0384 sugar transferase.
 
  
 0.631
Rvan_0435
PFAM: sugar transferase; KEGG: cpb:Cphamn1_0384 sugar transferase.
 
  
 0.631
Rvan_2767
PFAM: sugar transferase; KEGG: gwc:GWCH70_3256 undecaprenyl-phosphate galactose phosphotransferase.
 
  
 0.611
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
Server load: medium (52%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.