STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_0844PFAM: C-methyltransferase; Methyltransferase domain protein; KEGG: rhi:NGR_b13420 methyltransferase. (422 aa)    
Predicted Functional Partners:
Rvan_0832
PFAM: NAD-dependent epimerase/dehydratase; KEGG: rhi:NGR_b13380 UDP-glucose 4-epimerase.
   
 0.976
Rvan_0843
Glucose-1-phosphate cytidylyltransferase; KEGG: bov:BOV_A0382 nucleotidyltransferase family protein.
 
  
 0.954
Rvan_0842
PFAM: LmbE family protein; KEGG: bra:BRADO4834 putative deacetylase.
 
     0.952
Rvan_0833
PFAM: Protein of unknown function DUF2172, aminopeptidase-like; KEGG: scb:SCAB_23491 hypothetical protein.
 
 
   0.785
Rvan_0841
PFAM: glycosyl transferase family 2; KEGG: rce:RC1_3994 glycosyl transferase, group 2 family protein.
 
  
 0.708
Rvan_0845
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
 
  
 0.679
gmd
GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
 
  
 0.605
Rvan_0826
PFAM: aminotransferase class-III; KEGG: rhi:NGR_b13490 glutamate-1-semialdehyde 2,1-aminomutase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
   
 0.573
Rvan_0535
Von Willebrand factor type A; KEGG: rce:RC1_2082 magnesium chelatase subunit D; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A.
  
 
 0.572
Rvan_3356
Amino acid adenylation domain protein; KEGG: npu:Npun_F3228 non-ribosomal peptide synthetase; TIGRFAM: amino acid adenylation domain protein; non-ribosomal peptide synthetase; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; transferase hexapeptide repeat containing protein.
 
 
 
 0.496
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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