STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_0888L-lactate transport; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family. (557 aa)    
Predicted Functional Partners:
lldD
FMN-dependent alpha-hydroxy acid dehydrogenase; Catalyzes the conversion of L-lactate to pyruvate. Is coupled to the respiratory chain; Belongs to the FMN-dependent alpha-hydroxy acid dehydrogenase family.
  
 0.992
Rvan_0889
GntR domain protein; KEGG: sml:Smlt2909 putative L-lactate dehydrogenase operon regulator; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH.
  
 0.974
Rvan_0748
KEGG: mes:Meso_0368 iron-sulfur cluster binding protein; TIGRFAM: iron-sulfur cluster binding protein; PFAM: protein of unknown function DUF162.
 
  
 0.818
Rvan_2412
D-lactate dehydrogenase (cytochrome); KEGG: FAD linked oxidase domain protein; PFAM: FAD linked oxidase domain protein.
  
  
 0.779
mdh
Malate dehydrogenase, NAD-dependent; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.
  
  
 0.693
Rvan_3667
PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: tgr:Tgr7_3164 protein of unknown function DUF224 cysteine-rich region domain protein.
 
  
 0.645
Rvan_0747
PFAM: protein of unknown function DUF162; KEGG: xau:Xaut_1767 hypothetical protein.
 
  
 0.568
Rvan_0891
PFAM: HI0933 family protein; KEGG: gdj:Gdia_0499 HI0933 family protein.
       0.522
Rvan_0887
Hypothetical protein; KEGG: rle:RL4485 putative ferredoxin containing dehydrogenase.
       0.517
Rvan_3239
PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: met:M446_1761 hypothetical protein.
  
  
 0.504
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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