STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_0892PFAM: Phasin; KEGG: mpo:Mpop_2492 phasin. (126 aa)    
Predicted Functional Partners:
Rvan_1938
Hypothetical protein; Manually curated; KEGG: oca:OCAR_4675 hypothetical protein.
  
     0.764
Rvan_3245
Porin; KEGG: rpt:Rpal_0925 porin.
  
     0.764
Rvan_0917
PFAM: protein of unknown function DUF1150; KEGG: oca:OCAR_4463 hypothetical protein.
  
     0.760
Rvan_1730
Porin; KEGG: rpt:Rpal_3853 porin.
  
     0.754
Rvan_1195
Porin; KEGG: porin.
  
     0.750
Rvan_1672
KEGG: rpt:Rpal_2206 hypothetical protein.
  
     0.740
Rvan_2014
KEGG: bja:blr0651 hypothetical protein.
  
     0.740
Rvan_1801
KEGG: rpb:RPB_2145 outer membrane protein.
  
     0.739
Rvan_0909
KEGG: met:M446_2502 hypothetical protein.
  
     0.734
Rvan_1206
KEGG: bra:BRADO6669 putative outer-membrane immunogenic protein precursor; putative secreted protein.
  
     0.731
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.