STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_0896PFAM: Extracellular ligand-binding receptor; KEGG: xau:Xaut_1437 extracellular ligand-binding receptor. (403 aa)    
Predicted Functional Partners:
Rvan_0894
KEGG: mno:Mnod_4447 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.960
Rvan_0898
PFAM: inner-membrane translocator; KEGG: mrd:Mrad2831_0059 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.953
Rvan_0897
PFAM: inner-membrane translocator; KEGG: oan:Oant_1399 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.948
Rvan_0895
KEGG: met:M446_3245 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.942
Rvan_1845
PFAM: Extracellular ligand-binding receptor; KEGG: rpe:RPE_0593 extracellular ligand-binding receptor.
  
 
 
0.913
Rvan_0819
PFAM: Extracellular ligand-binding receptor; KEGG: mes:Meso_3328 extracellular ligand-binding receptor.
   
 
  0.900
Rvan_2958
PFAM: Extracellular ligand-binding receptor; KEGG: mno:Mnod_1164 extracellular ligand-binding receptor.
     
 
0.900
Rvan_1843
KEGG: rpt:Rpal_0733 ABC transporter related; PFAM: ABC transporter related; inner-membrane translocator; SMART: AAA ATPase; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.892
Rvan_2960
KEGG: met:M446_1796 ABC transporter related; PFAM: ABC transporter related; inner-membrane translocator; SMART: AAA ATPase; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.873
Rvan_1844
PFAM: inner-membrane translocator; KEGG: rpe:RPE_0594 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.636
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.