Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rvan_0899PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; KEGG: azl:AZL_a03000 hemolysin. (428 aa)    
Predicted Functional Partners:
Rvan_1365
PFAM: Integral membrane protein TerC; KEGG: bja:bll4584 hypothetical protein.
      0.902
Rvan_0900
PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: pla:Plav_2894 6-phosphogluconate dehydrogenase NAD-binding.
       0.636
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
     
 0.559
Rvan_0639
Hypothetical protein; KEGG: rpc:RPC_4933 peptidase.
   
    0.476
ybeY
Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
  
  
 0.476
Rvan_2955
Hypothetical protein; KEGG: rpc:RPC_4933 peptidase.
   
    0.476
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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