STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_0923PFAM: Uncharacterised conserved protein UCP033924; KEGG: nwi:Nwi_0516 hypothetical protein. (297 aa)    
Predicted Functional Partners:
Rvan_0922
KEGG: rpc:RPC_4252 hypothetical protein.
 
     0.856
Rvan_0925
PFAM: Protein of unknown function DUF2328; KEGG: mrd:Mrad2831_4036 hypothetical protein.
 
     0.806
Rvan_3201
PFAM: Protein of unknown function DUF2093; KEGG: mes:Meso_0440 hypothetical protein.
  
   
 0.764
Rvan_1935
KEGG: bqu:BQ07600 hypothetical protein.
  
   
 0.762
Rvan_0926
Hypothetical protein; KEGG: mno:Mnod_3620 flagellar export protein FliJ.
  
     0.757
Rvan_1371
KEGG: oan:Oant_2153 hypothetical protein.
  
     0.752
Rvan_2349
PFAM: protein of unknown function DUF1214; KEGG: msl:Msil_1663 protein of unknown function DUF1214.
  
     0.724
Rvan_0615
PFAM: protein of unknown function DUF1036; KEGG: rpb:RPB_1424 hypothetical protein.
  
     0.721
Rvan_3195
PFAM: protein of unknown function DUF1465; KEGG: mch:Mchl_2633 protein of unknown function DUF1465.
  
     0.720
Rvan_0447
KEGG: rpe:RPE_1474 hypothetical protein.
  
     0.716
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.