Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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Textmining
[Homology]
Score
Rvan_0925PFAM: Protein of unknown function DUF2328; KEGG: mrd:Mrad2831_4036 hypothetical protein. (217 aa)    
Predicted Functional Partners:
Rvan_0927
Two component transcriptional regulator, winged helix family; KEGG: oca:OCAR_7111 cell cycle transcriptional regulator CtrA; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver.
  
 0.980
Rvan_3025
KEGG: multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; response regulator receiver.
  
 0.956
Rvan_0177
KEGG: rhi:NGR_c28760 putative two-component response regulator transcriptional regulatory protein; PFAM: response regulator receiver; SMART: response regulator receiver.
  
 0.954
Rvan_0923
PFAM: Uncharacterised conserved protein UCP033924; KEGG: nwi:Nwi_0516 hypothetical protein.
 
     0.808
Rvan_1915
PFAM: protein of unknown function DUF1153; KEGG: azc:AZC_1033 hypothetical protein.
  
    0.764
Rvan_1597
KEGG: met:M446_0500 multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein.
  
 
 0.750
Rvan_2905
PFAM: Uncharacterised conserved protein UCP033924; KEGG: rlg:Rleg_3339 hypothetical protein.
 
     0.733
Rvan_3386
KEGG: bja:blr1391 cell division protein.
  
     0.724
Rvan_2354
Two component transcriptional regulator, winged helix family; KEGG: xau:Xaut_3176 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver.
  
 
 0.718
Rvan_3195
PFAM: protein of unknown function DUF1465; KEGG: mch:Mchl_2633 protein of unknown function DUF1465.
  
     0.715
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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