STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_0992KEGG: bbt:BBta_6411 reaction center protein H chain (photosynthetic reaction center H subunit); TIGRFAM: photosynthetic reaction center H subunit; PFAM: Photosynthetic reaction centre H subunit; PRC-barrel domain protein. (255 aa)    
Predicted Functional Partners:
Rvan_0217
Photosynthetic reaction center, M subunit; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.
  
 0.998
Rvan_0218
Photosynthetic reaction centre cytochrome c subunit; The reaction center of purple bacteria contains a tightly bound cytochrome molecule which re-reduces the photo oxidized primary electron donor.
  
 0.997
Rvan_0215
Antenna complex alpha/beta subunit; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.
  
 0.996
Rvan_0214
Antenna complex alpha/beta subunit; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.
  
 
 0.995
Rvan_0216
KEGG: mch:Mchl_2963 photosynthetic reaction center L subunit; TIGRFAM: photosynthetic reaction center L subunit; PFAM: photosynthetic reaction centre protein.
  
 0.994
Rvan_0991
KEGG: rru:Rru_A0616 photosynthetic complex assembly protein.
 
    0.980
Rvan_0994
TIGRFAM: magnesium protoporphyrin O-methyltransferase; KEGG: rce:RC1_2111 Mg-protoporphyrin IX methyl transferase; PFAM: Magnesium-protoporphyrin IX methyltransferase domain protein.
 
  
 0.977
Rvan_0999
KEGG: rpb:RPB_3982 2-vinyl bacteriochlorophyllide hydratase; TIGRFAM: 2-vinyl bacteriochlorophyllide hydratase; PFAM: 2-vinyl bacteriochlorophyllide hydratase.
 
  
 0.974
Rvan_0990
KEGG: rce:RC1_2107 photosynthetic complex assembly protein PuhC, putative.
 
    0.973
bchN
Light-independent protochlorophyllide reductase, N subunit; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex.
 
  
 0.969
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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