Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Rvan_1005PFAM: TspO/MBR family protein; KEGG: mpt:Mpe_A2778 tryptophan-rich sensory protein. (176 aa)    
Predicted Functional Partners:
Rvan_1002
KEGG: mch:Mchl_5287 bacteriochlorophyll/chlorophyll a synthase; TIGRFAM: bacteriochlorophyll/chlorophyll synthetase; PFAM: UbiA prenyltransferase.
  
  
 0.861
Rvan_1003
PFAM: PUCC protein; KEGG: met:M446_3713 PucC protein.
 
    0.833
Rvan_1004
KEGG: rce:RC1_2080 geranylgeranyl reductase BchP; TIGRFAM: geranylgeranyl reductase; PFAM: FAD dependent oxidoreductase.
  
  
 0.827
Rvan_2242
PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: rce:RC1_2026 deoxyribodipyrimidine photolyase family protein.
 
  
 0.613
Rvan_0999
KEGG: rpb:RPB_3982 2-vinyl bacteriochlorophyllide hydratase; TIGRFAM: 2-vinyl bacteriochlorophyllide hydratase; PFAM: 2-vinyl bacteriochlorophyllide hydratase.
  
    0.573
Rvan_1000
Manually curated; KEGG: rce:RC1_2117 coenzyme B12-binding aerobic repressor.
  
  
 0.569
Rvan_1001
KEGG: rce:RC1_2118 transcriptional regulator CrtJ (homologous to PpsR); TIGRFAM: transcriptional regulator PpsR; PAS sensor protein; PFAM: helix-turn-helix Fis-type; PAS fold-4 domain protein; PAS fold domain protein.
     
 0.542
Rvan_1006
KEGG: mpo:Mpop_5369 hypothetical protein.
       0.529
bchN
Light-independent protochlorophyllide reductase, N subunit; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex.
  
  
 0.500
bchB
Light-independent protochlorophyllide reductase, B subunit; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex.
  
  
 0.489
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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