STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_1053Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rlg:Rleg_0654 transcriptional regulator, LysR family. (304 aa)    
Predicted Functional Partners:
Rvan_1062
PFAM: Carboxymuconolactone decarboxylase; Cupin 2 conserved barrel domain protein; KEGG: smd:Smed_4453 carboxymuconolactone decarboxylase.
 
  
 0.612
Rvan_1644
KEGG: xau:Xaut_0477 glutamate synthase (ferredoxin); PFAM: glutamine amidotransferase class-II; glutamate synthase; ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein.
  
  
 0.571
Rvan_1058
PFAM: Cupin 2 conserved barrel domain protein; KEGG: ddr:Deide_3p00870 hypothetical protein.
 
  
 0.557
Rvan_1054
PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bid:Bind_1770 alcohol dehydrogenase.
       0.529
Rvan_0296
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: azc:AZC_4162 regulatory protein; Belongs to the LysR transcriptional regulatory family.
  
     0.511
Rvan_2198
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: xau:Xaut_2573 LysR family transcriptional regulator.
  
     0.462
Rvan_1052
PFAM: Integrase catalytic region; KEGG: nwi:Nwi_2917 integrase, catalytic region.
  
    0.448
Rvan_1055
PFAM: Alcohol dehydrogenase GroES domain protein; Twin-arginine translocation pathway, signal sequence, subgroup; Alcohol dehydrogenase zinc-binding domain protein; KEGG: ank:AnaeK_3351 alcohol dehydrogenase GroES domain protein.
       0.436
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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