STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_1079Protein of unknown function DUF1778; KEGG: nwi:Nwi_0837 hypothetical protein; manually curated; PFAM: protein of unknown function DUF1778. (90 aa)    
Predicted Functional Partners:
Rvan_1080
PFAM: GCN5-related N-acetyltransferase; KEGG: rpt:Rpal_1884 GCN5-related N-acetyltransferase.
   
   0.909
Rvan_1078
Helix-turn-helix domain protein; KEGG: xfa:XFa0001 transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
  
    0.645
Rvan_0043
PFAM: GCN5-related N-acetyltransferase; KEGG: mag:amb3392 hypothetical protein.
   
   0.604
Rvan_0151
KEGG: gau:GAU_0057 hypothetical protein.
   
   0.604
Rvan_1175
KEGG: nwi:Nwi_0012 ribosomal-protein-alanine acetyltransferase; TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase.
   
   0.604
Rvan_1919
PFAM: GCN5-related N-acetyltransferase; KEGG: slt:Slit_0716 GCN5-related N-acetyltransferase.
   
   0.604
Rvan_2257
PFAM: GCN5-related N-acetyltransferase; KEGG: rpd:RPD_0697 GCN5-related N-acetyltransferase.
   
   0.604
Rvan_2596
PFAM: GCN5-related N-acetyltransferase; KEGG: azl:AZL_019520 acetyltransferase.
   
   0.604
Rvan_2735
PFAM: GCN5-related N-acetyltransferase; KEGG: mdi:METDI3680 putative acetyltransferase.
   
   0.604
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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